Detailed Locus Information for CNAG_07411T0
| Species | Cryptococcus neoformans var. grubii H99 |
|---|---|
| Gene Annotation | histone demethylase JARID1 |
| Gene Symbol | RUM1 |
| TF Family Name | Transcription factor jumonji Classification based on Fungal Transcription Factor DB |
| KEGG Linkout | KEGG::CND05870 |
| Genome Browser | JBrowse link goes here. Sequence information also available from JBrowse. |
| Functional Annotation | |
| Amino Acid Sequence | MLPSSQQTTVAGPLPATPDQLSLRRRHPSSKQGTPRNLDSPSRCKPSPSEPARRGKPTFFSSMHFSQALPQPIPSMIPDEPRSELQRSQRRSKVEALTKIDRTGTPIQSAAGPAATSFVPHTIQKSTSSPSAPHYLRNPLHRPKVFNQPFSIDSVRTKAPRHPHPRTEPRLFGLEDCPTFYPTPEQFKDPMAYIDSIAQQGKKYGMCKVVPPEGWHMPFRLETETFRFKARLQRLNQLEAASRAKLNFLEQLSMYHMQQGDSKIHIPLIDRQPLDLWKLRREVNRSGGNLELDRTKGWSKITETLGHKPSWTPHVRAAYMNIVLPFDNWAVRAKSASVSPLARLNPRTSGSPSKPPPPFVNDNFSASPVKQGRGISRRDITPYHPTLKIRSNGMPFVSPPDNGRPLSKRASVNCGSALADAIEIDQPSSLSTAPSATPNTPTTLRINVPGFSDLEGSDSELSDEDSALSSPSIRKALSEAEYQKGEVCEICKAEHDADKILLCDGCDRGFHIYCLDPPLASVPTNEEWYCTSCLLSQGEDFGFEEGDEHSVASFQARDAAFSYAWWNRHVQHNSSWTSINEAQPTDNGDSERIKPRQLGKVTVSEDDVEREFWRLTESSLDTVDVEYGADIHSTSHGSAGPTLETHPLDPYSRDPWNLNNISILPDSLLRYIKSDISGMTVPWIYIGMMFSTFCWHNEDHYTYSINYMYWGETKTWYGIPGSDAEKFETAIKSEAPDLFEQQPGLLFQLITMMNPGRLSDAGVKVVACDQRPNEFVITFPKAYHCGFNHGINMNEAVNFALPDWLPDGKDSVRRYREHNKAPVFSHNELLITITLFSETIRTALWLKNALIEMVEEESARRGALRAKHPKLVEDLIEEDCPEEQYQCAVCKAFCYLAQVTCSCTSQVSCLSHADQLCTCGKPRKVLRMRYSEAQLEDIRDVVVHRAALPEQWRLRFLSLMGSPRPQLKSLRILVSEGERIAHPIPDLGPLKRFVDVATSLIQHIMAVTARKSGGRRKKASRGDGNRKGKRTRAERDDGEDDGIDRGPDVLTSLLKQADRLAFDAPELPQLRQLMLTIEDFRTEASSLLVTPEDQLDRQRCKNALILGQSFGLNFPELPPLERLVQRQEWFRQLEEEVDDANMEYDDVVALLEESLECQIPQDHVMVKELRVREGKGKQWLESVEKLLASSQITIDDISALIEARQHVPVSIDILRKLESLRKSAVSWQTSARNVFATNRSSVAAFRLCKSIAAASKPLSNVVIPEIRELQAELEHHALWREEASKVLGVPVASLVSTIDYIRSEFENSLAPDDDAHNNQRVCFCRSSPTDNMIMCKICQHSYHPRCVDVSLRHVPEEFKCAMCQRLPNDDGPSLDAFIGLISTQRWNFLISPSEFEPAQYIASAAIRYAPQAFRLADPLNLSPPCRDLELLRHTIRKIYTLPLVFDAHNSQTNERCVFVNWLFRRMQDAVRMETKEIPMLAVGLQSKIGRRPSVALAAEQFTLVNSENGTPSRRARPRRRARIILAESHPHEFHCLCGMPSADENTSAQIECPKCGQGYHAGCVKVTEELAGKSIWACPCCTVRDGRHYQKGAEVRVQLSSHRGTDQFLDYRTIINDFAERLIVVTKPISAGAITLECIDFVPAHIPNDVKTVEERENSLNRIKKRKFGGVNGVFRNEQATNNLVAHGLNTVATKGFMGPPSTILNPKQTTSSGISDSSVAMSALSDIQTKSSAVPRTIYTAAESDANTSVPWLTPTIQNRSTFDLRSDFGLESCSSSTPVAVGASTTSVVRQNGGTPSAATICCEGRVTPVVGKSVHDDNIDSRAGYKERYSYSDMEELIAVKEGRHVVDEDVTMENQ |
Expression Data
| Notation | Condition | Normalized Raw Expression |
|---|---|---|
| A | YPD 30°C, concentration: 2x 10^8 cells/ml | 17767 |
| B | YPD 30°C, concentration: 5x10^7 cells/ml | 8124 |
| C | YPD 30°C, fluconazole treatment, concentration: 5x10^7 cells/ml | 8596 |
| D | YPD 30°C, SDS 0.01% treatment, concentration: 5x10^7 cells/ml | 8409 |
| E | YPD 37°C, concentration: 5x10^7 cells/ml | 8893 |
| F | YP+galactose 30°C, concentration: 2x10^8 cells/ml | 14401 |
Gene Disruption Strategy
| Primer Name | Description | Primer Sequence |
|---|---|---|
| L1 | 5' flanking region primer 1 | AGACCCGCCAAAACAATC |
| L2 | 5' flanking region primer 2 | CTGGCCGTCGTTTTACTTGGACCTACGCTGACTTC |
| PO | Southern blot probe primer | TACGAGGATTGAGTCTGGC |
| R1 | 3' flanking region primer 1 | GTCATAGCTGTTTCCTGGACTTGCGTTCTGATTTTGG |
| R2 | 3' flanking region primer 2 | GCTGTTATCAAGAGAATGCC |
| SO | diagnostic screening primer, pairing with B79 | ACGACTGGCTATCAAGCAG |
Phenotype Assays
| Growth | |
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| Mating Data | |
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| Virulence Factor Production | |
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Capsule
Urease
Melanin
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| Stress Response and Adaptation | |
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Osmotic Stress
Oxidative Stress
Heavy Metal Stress
Cell Wall Stress
ER Stress
Genotoxic Stress
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| Antifungal Drug Susceptibility | |
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| Virulence Data by the Insect Host Model (Galleria mellonella) | |
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| Lung Infectivity Data by the Signature-tag Mutagenesis-based Murine Host Model | |
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